use strict;
my $str = 'homo sapiens AND curationstatus:"Manually curated" AND modellingapproach:"Ordinary differential equation model"
test AND UNIPROT:23456 AND metabolism AND heart AND TAXONOMY:40674 AND curation:"Non curated" AND GO:GO:34212 AND publication:23444 AND modellingapproach:"logical model" AND cancer
modelformat:"SBML" AND modelformat:"SBML" AND modellingapproach:"Ordinary differential equation model" AND TAXONOMY:9606
*:* AND modelformat:"SBML" AND modellingapproach:"Ordinary differential equation model" AND TAXONOMY:9606 AND TAXONOMY:10090
*:* AND disease:"Lung Adenocarcinoma" AND cancer AND tumor';
my $regex = qr/((AND|OR|NOT)( ))?([a-z_A-Z0-9]*):("\w+.*"|\w+(:?\w+))/mp;
if ( $str =~ /$regex/g ) {
print "Whole match is ${^MATCH} and its start/end positions can be obtained via \$-[0] and \$+[0]\n";
# print "Capture Group 1 is $1 and its start/end positions can be obtained via \$-[1] and \$+[1]\n";
# print "Capture Group 2 is $2 ... and so on\n";
}
# ${^POSTMATCH} and ${^PREMATCH} are also available with the use of '/p'
# Named capture groups can be called via $+{name}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html