# coding=utf8
# the above tag defines encoding for this document and is for Python 2.x compatibility
import re
regex = r"\b\d+\s+[A-Z]{3}\s+[A-Z0-9]+"
test_str = (" 1 -1 2 SER HA H 4.477 0.003 1\n"
" 2 -1 2 SER HB2 H 3.765 0.001 1\n"
" 3 -1 2 SER HB3 H 3.765 0.001 1\n"
" 4 -1 2 SER C C 173.726 0.2 1\n"
" 5 -1 2 SER CA C 58.16 0.047 1\n"
" 6 -1 2 SER CB C 64.056 0.046 1\n"
" 7 0 3 HIS H H 8.357 0.004 1\n"
" 8 0 3 HIS HA H 4.725 0.003 1\n"
" 9 0 3 HIS HB2 H 3.203 0.003 2\n"
" .....\n"
" 63 7 10 GLU HA H 4.328 0.004 1\n"
" 64 7 10 GLU HB2 H 2.154 0.005 2\n"
" 65 7 10 GLU HB3 H 2.156 0.004 2\n"
" 66 7 10 GLU HG2 H 2.262 0.014 2\n"
" 67 7 10 GLU HG3 H 2.464 0.001 2\n"
" 68 7 10 GLU C C 177.242 0.2 1\n"
" 69 7 10 GLU CA C 59.009 0.068 1")
matches = re.finditer(regex, test_str, re.MULTILINE)
for matchNum, match in enumerate(matches, start=1):
print ("Match {matchNum} was found at {start}-{end}: {match}".format(matchNum = matchNum, start = match.start(), end = match.end(), match = match.group()))
for groupNum in range(0, len(match.groups())):
groupNum = groupNum + 1
print ("Group {groupNum} found at {start}-{end}: {group}".format(groupNum = groupNum, start = match.start(groupNum), end = match.end(groupNum), group = match.group(groupNum)))
# Note: for Python 2.7 compatibility, use ur"" to prefix the regex and u"" to prefix the test string and substitution.
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html