$re = '/\/(\w+)=(\d+|"(?:""|[^"])*"(?!"))/';
$str = '/mol_type="protein" /transl_table=11 /note="[CDS] (""multi
line)" nn /organism="""Some"" Sequence" nn /organism="Some ""Sequence"""
/translation="MHPSSSRIPHIAVVGVSAIFPGSLDAHGFWRDILSGTDLITDVPSTHWLVE
DYYDPDPSAPDKTYAKRGAFLKDVPFDPLEWGVPPSIVPATDTTQLLALIVAKRVLEDAAQGQFE
SMSRERMSVILGVTSAQELLASMVSRIQRPVWAKALRDLGYPEDEVKRACDKIAGNYVPWQESSF
PGLLGNVVAGRIANRLDLGGTNCVTDAACASSLSAMSMAINELALGQSDLVIAGGCDTMNDAFMY
MCFSKTPALSKSGDCRPFSDKADGTLLGEGIAMVALKRLDDAERDGDRVYAVIRGIGSSSDGRSK
SVYAPVPEGQAKALRRTYAAAGYGPETVELMEAHGTGTKAGDAAEFEGLRAMFDESGREDRQWCA
LGSVKSQIGHTKAAAGAAGLFKAIMALHHKVLPPTIKVDKPNPKLDIEKTAFYLNTQARPWIRPG
DHPRRASVSSFGFGGSNFHVALEEYTGPAPKAWRVRALPAELFLLSADTPAALADRARALAKEAE
VPEILRFLARESVLSFDASRPARLGLCATDEADLRKKLEQVAAHLEARPEQALSAPLVHCASGEA
PGRVAFLFPGQGSQYVGMGADALMTFDPARAAWDAAAGVAIADAPLHEVVFPRPVFSDEDRAAQE
ARLRETRWAQPAIGATSLAHLALLAALGVRAEAFAGHSFGEITALHAAGALSAADLLRVARRRGE
LRTLGQVVDHLRASLPAAGPAASASPAAAASVPKASTAAVPAVASVAAPGAAEVERVVMAVVAET
TGYPAEMLGLQMELESDLGIDSIKRVEILSAVRDRTPGLSEVDASALAQLRTLGQVVDHLRASLP
AASAGPAVAAPAAKAPAVAAPTGVSGATPGAAEVERVVMAVVAETTGYPAEMLGLQMELESDLGI
DSIKRVEILSAVRDRTPGLAEVDASALAQLRTLGQVVDHLRASLGPAAVTAGAAPAEPAEEPAST
PLGRWTLVEEPAPAAGLAMPGLFDAGTLVITGHDAIGPALVAALAARGIAAEYAPAVPRGARGAV
FLGGLRELATADAALAVHREAFLAAQAIAAKPALFVTVQDTGGDFGLAGSDRAWVGGLPGLVKTA
ALEWPEASCRAIDLERAGRSDGELAEAIASELLSGGVELEIGLRADGRRTTPRSVRQDAQPGPLP
LGPSDVVVASGGARGVTAATLIALARASHARFALLGRTALEDEPAACRGADGEAALKAALVKAAT
SAGQRVTPAEIGRSVAKILANREVRATLDAIRAAGGEALYVPVDVNDARAVAAALDGVRGALGPV
TAIVHGAGVLADKLVAEKTVEQFERVFSTKVDGLRALLGATAGDPLKAIVLFSSIAARGGNKGQC
DYAMANEVLNKVAAAEAARRPGCRVKSLGWGPWQGGMVNAALEAHFAQLGVPLIPLAAGAKMLLD
ELCDASGDRGARGQGGAPPGAVELVLGAEPKALAAQGHGGRVALAVRADRATHPYLGDHAINGVP
VVPVVIALEWFARAARACRPDLVVTELRDVRVLRGIKLAAYESGGEVFRVDCREVSNGHGAVLAA
ELRGPQGALHYAATIQMQQPEGRVAPKGPAAPELGPWPAGGELYDGRTLFHGRDFQVIRRLDGVS
RDGIAGTVVGLREAGWVAQPWKTDPAALDGGLQLATLWTQHVLGGAALPMSVGALHTFAEGPSDG
PLRAVVRGQIVARDRTKADIAFVDDRGSLVAELRDVQYVLRPDTARGQA"
/note="primer of Streptococcus pneumoniae';
preg_match_all($re, $str, $matches, PREG_SET_ORDER, 0);
// Print the entire match result
var_dump($matches);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php