# coding=utf8
# the above tag defines encoding for this document and is for Python 2.x compatibility
import re
regex = r"^chr(1?[0-9]|2[0-2]|X|Y)"
test_str = ("chr1 3009844 3009908 DXX 42 -\n"
"chr2 3000386 3000450 DXX 15 -\n"
"chr3 3000386 3000450 DXX 15 -\n"
"chr4 3000386 3000450 DXX 15 -\n"
"chr5 3000386 3000450 DXX 15 -\n"
"chr6 3000386 3000450 DXX 15 -\n"
"chr7 3000386 3000450 DXX 15 -\n"
"chr8 3000386 3000450 DXX 15 -\n"
"chr9 3000386 3000450 DXX 15 -\n"
"chr10 3000386 3000450 DXX 15 -\n"
"chr11 3000386 3000450 DXX 15 -\n"
"chr12 3000386 3000450 DXX 15 -\n"
"chr13 3000386 3000450 DXX 15 -\n"
"chr14 3000386 3000450 DXX 15 -\n"
"chr15 3000386 3000450 DXX 15 -\n"
"chr16 3000386 3000450 DXX 15 -\n"
"chr17 3000386 3000450 DXX 15 -\n"
"chr18 3000386 3000450 DXX 15 -\n"
"chr19 3000386 3000450 DXX 15 -\n"
"chrX 3000386 3000450 DXX 15 -\n"
"chrY 3000386 3000450 DXX 15 -\n"
"chr1_GL456210_random 3000386 3000450 DXX 15 -\n"
"chr1_GL456211_random 3000386 3000450 DXX 15 -\n"
"chr1_GL456212_random 3000386 3000450 DXX 15 -\n"
"chr1_GL456221_random 3000386 3000450 DXX 15 -\n"
"chr4_GL456216_random 3000386 3000450 DXX 15 -\n"
"chr4_JH584292_random 3000386 3000450 DXX 15 -\n"
"chr4_JH584295_random 3000386 3000450 DXX 15 -\n"
"chr5_GL456354_random 3000386 3000450 DXX 15 -\n"
"chr5_JH584296_random 3000386 3000450 DXX 15 -\n"
"chr5_JH584297_random 3000386 3000450 DXX 15 -\n"
"chr5_JH584299_random 3000386 3000450 DXX 15 -\n"
"chrX_GL456233_random 3000386 3000450 DXX 15 -")
matches = re.finditer(regex, test_str, re.MULTILINE)
for matchNum, match in enumerate(matches, start=1):
print ("Match {matchNum} was found at {start}-{end}: {match}".format(matchNum = matchNum, start = match.start(), end = match.end(), match = match.group()))
for groupNum in range(0, len(match.groups())):
groupNum = groupNum + 1
print ("Group {groupNum} found at {start}-{end}: {group}".format(groupNum = groupNum, start = match.start(groupNum), end = match.end(groupNum), group = match.group(groupNum)))
# Note: for Python 2.7 compatibility, use ur"" to prefix the regex and u"" to prefix the test string and substitution.
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html