import re
regex = re.compile(r"^[ATGC]+$", flags=re.MULTILINE)
test_str = (">Contig1\n"
"TGGCACCTTCGACAGTTGCTCCCTCCTGGGTGGGGGCCGTCTGACCTCGCTGTACTCCT\n"
">Contig2\n"
"GGGCCTTGGGAAGCGCAGGTGCCGAGAACTTGGCTAGAGCGGTAGACAATGCGGTTCGTG\n"
"AAAAGAGCAACTTTAAATACTTGTACGACCTCAACCAGCCAGTCAAAGAGAAAATCGAG\n"
">NODE_105957_length_443_cov_1.000000\n"
"TCAGAAGTTAATGCAATCTGGTCCATTAAGTAAATGGGTATCATGGTACATAAACTAAAA\n"
"GCACAGAACATGGATTATTTTCCCAATTTTAACTTTCCTAACCATTTTTATCTCTCTCAA\n"
"TAACTTCCACAGTAGTTTTTATTCGTCTCAATAACTTTATTAAAAGGGATCCCTCTATCC\n"
"CCAGAATTCAGTAGCTGCATACGACTTTCCTGTCACTAGAGATCCCTCAGATGTCGGTAG\n"
"TGCATTCATCTTAAGTGATAAATCAAATGTTAGTCAAGTTAGGAAGTGAGAATTGATACA\n"
"GAATTTCTACTTCAATACTAGCTATCCCAAAATGGTCATTGACGATTTATTTTTTTCCTA\n"
"CCAGCATATTCTTTTCTAGTATTTCAGATCTAGTGACTCAGAACTAGGACAATCATAAAT\n"
"TTGAAGGGAACCTTAAGTCTTTTTTCATGCTGAGACTGCCAAG\n"
">NODE_105950_length_95_cov_1.000000\n"
"TCAGGTCCTACTTCATTTGTAAGGAAAACTGACAGGTAATTCAGTGGGACAGAATACCAT\n"
"GTGAAGAGTTTCCTCTCACCTGAGAGGAGACTTTTTGATGATGATGATGATCAAT")
matches = regex.finditer(test_str)
for match_num, match in enumerate(matches, start=1):
print(f"Match {match_num} was found at {match.start()}-{match.end()}: {match.group()}")
for group_num, group in enumerate(match.groups(), start=1):
print(f"Group {group_num} found at {match.start(group_num)}-{match.end(group_num)}: {group}")
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html