$re = '/:\w+-\w+\K\s|\sNODE_|_length_|_cov_|,\s/m';
$str = 'NZ_MCQZ01000071.1:2282-2767 Klebsiella pneumoniae strain TR196 Scaffold45_1, whole genome shotgun sequence
RYOH01000117.1:3-590 Klebsiella pneumoniae strain 16WZ-131 NODE_117_length_2026_cov_233.332478, whole genome shotgun sequence
RYOJ01000145.1:3-857 Klebsiella pneumoniae strain 16WZ-128 NODE_145_length_2293_cov_224.091606, whole genome shotgun sequence
NZ_CABWRH010000049.1:1707-2128 Klebsiella pneumoniae strain SRRSH43 isolate SRRSH43, whole genome shotgun sequence
RYQS01000239.1:1916-2698 Klebsiella pneumoniae strain 16HN-12 NODE_239_length_2763_cov_7.539092, whole genome shotgun sequence';
preg_match_all($re, $str, $matches, PREG_SET_ORDER, 0);
// Print the entire match result
var_dump($matches);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php