# coding=utf8
# the above tag defines encoding for this document and is for Python 2.x compatibility
import re
regex = r":\w+-\w+\K\s|\sNODE_|_length_|_cov_|,\s"
test_str = ("NZ_MCQZ01000071.1:2282-2767 Klebsiella pneumoniae strain TR196 Scaffold45_1, whole genome shotgun sequence\n"
"RYOH01000117.1:3-590 Klebsiella pneumoniae strain 16WZ-131 NODE_117_length_2026_cov_233.332478, whole genome shotgun sequence\n"
"RYOJ01000145.1:3-857 Klebsiella pneumoniae strain 16WZ-128 NODE_145_length_2293_cov_224.091606, whole genome shotgun sequence\n"
"NZ_CABWRH010000049.1:1707-2128 Klebsiella pneumoniae strain SRRSH43 isolate SRRSH43, whole genome shotgun sequence\n"
"RYQS01000239.1:1916-2698 Klebsiella pneumoniae strain 16HN-12 NODE_239_length_2763_cov_7.539092, whole genome shotgun sequence")
matches = re.finditer(regex, test_str, re.MULTILINE)
for matchNum, match in enumerate(matches, start=1):
print ("Match {matchNum} was found at {start}-{end}: {match}".format(matchNum = matchNum, start = match.start(), end = match.end(), match = match.group()))
for groupNum in range(0, len(match.groups())):
groupNum = groupNum + 1
print ("Group {groupNum} found at {start}-{end}: {group}".format(groupNum = groupNum, start = match.start(groupNum), end = match.end(groupNum), group = match.group(groupNum)))
# Note: for Python 2.7 compatibility, use ur"" to prefix the regex and u"" to prefix the test string and substitution.
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html