import java.util.regex.Matcher;
import java.util.regex.Pattern;
public class Example {
public static void main(String[] args) {
final String regex = "^chr(?:0?[1-9]|[1-9][0-9]|[MXY])\\t0*[1-9][0-9]*\\t[^\\t]*(?:\\t[ATCG]){2}\\t";
final String string = "Chr1 74226650 . T C 50 . DP=385;VDB=0;SGB=-0.693147;RPB=0.982669;MQB=1;BQB=0.947576;MQ0F=0;AC=2;AN=2;DP4=0,95,0,289;MQ=20, GT:PL:DP, 1/1:78,127,0:384";
final Pattern pattern = Pattern.compile(regex, Pattern.MULTILINE | Pattern.CASE_INSENSITIVE);
final Matcher matcher = pattern.matcher(string);
while (matcher.find()) {
System.out.println("Full match: " + matcher.group(0));
for (int i = 1; i <= matcher.groupCount(); i++) {
System.out.println("Group " + i + ": " + matcher.group(i));
}
}
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Java, please visit: https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html