import java.util.regex.Matcher;
import java.util.regex.Pattern;
public class Example {
public static void main(String[] args) {
final String regex = "^(\\S+).*?(Transmembrane)\\t(\\w*)\\t(\\w*)";
final String string = "O75581 UniProtKB Transmembrane 1371 1393 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255 \n\n"
+ "O75581 UniProtKB Topological domain 1394 1613 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 \n\n"
+ "O75581 UniProtKB Repeat 63 106 . . . Note=LDL-receptor class B 1 \n\n"
+ "P13688 UniProtKB Transmembrane 429 452 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255 \n\n"
+ "P13688 UniProtKB Topological domain 453 526 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 \n\n"
+ "P13688 UniProtKB Domain 35 142 . . . Note=Ig-like V-type;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P31997 \n\n"
+ "P19022 UniProtKB Transmembrane 725 745 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255 \n\n";
final Pattern pattern = Pattern.compile(regex, Pattern.MULTILINE);
final Matcher matcher = pattern.matcher(string);
while (matcher.find()) {
System.out.println("Full match: " + matcher.group(0));
for (int i = 1; i <= matcher.groupCount(); i++) {
System.out.println("Group " + i + ": " + matcher.group(i));
}
}
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Java, please visit: https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html