use strict;
my $str = 'O75581 UniProtKB Transmembrane 1371 1393 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
O75581 UniProtKB Topological domain 1394 1613 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
O75581 UniProtKB Repeat 63 106 . . . Note=LDL-receptor class B 1
P13688 UniProtKB Transmembrane 429 452 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
P13688 UniProtKB Topological domain 453 526 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255
P13688 UniProtKB Domain 35 142 . . . Note=Ig-like V-type;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P31997
P19022 UniProtKB Transmembrane 725 745 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255
';
my $regex = qr/^(\S+).*?(Transmembrane)\t(\w*)\t(\w*)/mp;
if ( $str =~ /$regex/g ) {
print "Whole match is ${^MATCH} and its start/end positions can be obtained via \$-[0] and \$+[0]\n";
# print "Capture Group 1 is $1 and its start/end positions can be obtained via \$-[1] and \$+[1]\n";
# print "Capture Group 2 is $2 ... and so on\n";
}
# ${^POSTMATCH} and ${^PREMATCH} are also available with the use of '/p'
# Named capture groups can be called via $+{name}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html