import java.util.regex.Matcher;
import java.util.regex.Pattern;
public class Example {
public static void main(String[] args) {
final String regex = "NF.*?(\\d*)\\|.*";
final String string = "NF3-9-16S_S9_1456|M02255:210:000000000-B9K3P:1:1101:14397:18152 1:N:0:9|o:50|m/o:0.720000|MR:n=0;r1=34;r2=2|Q30:p=97;p=100|CO:0|mismatches:36\n\n"
+ "NF3-9-16S_S9_9999|M02255:210:000000000-B9K3P:1:1101:14397:18152 1:N:0:9|o:50|m/o:0.720000|MR:n=0;r1=34;r2=2|Q30:p=97;p=100|CO:0|mismatches:36";
final String subst = "Re1_91910_$1";
final Pattern pattern = Pattern.compile(regex);
final Matcher matcher = pattern.matcher(string);
// The substituted value will be contained in the result variable
final String result = matcher.replaceAll(subst);
System.out.println("Substitution result: " + result);
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Java, please visit: https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html