import java.util.regex.Matcher;
import java.util.regex.Pattern;
public class Example {
public static void main(String[] args) {
final String regex = "(?:FAO=|\\G,)\\K(\\d+)";
final String string = "chr1 11189845 COSM462604;COSM893813 G C,T 158.16 PASS AF=0,0;AO=0,0;DP=1201;FAO=0,0;FDP=1201;FR=.;\n"
+ "chr1 11190804 COSM180789 C T 134.06 PASS AF=0;AO=0;DP=1016;FAO=0;FDP=1018;FR=.;FRO=1018;\n";
final Pattern pattern = Pattern.compile(regex, Pattern.MULTILINE);
final Matcher matcher = pattern.matcher(string);
while (matcher.find()) {
System.out.println("Full match: " + matcher.group(0));
for (int i = 1; i <= matcher.groupCount(); i++) {
System.out.println("Group " + i + ": " + matcher.group(i));
}
}
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Java, please visit: https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html