import re
regex = re.compile(r"(?:FAO=|\G,)\K(\d+)", flags=re.MULTILINE)
test_str = ("chr1 11189845 COSM462604;COSM893813 G C,T 158.16 PASS AF=0,0;AO=0,0;DP=1201;FAO=0,0;FDP=1201;FR=.;\n"
"chr1 11190804 COSM180789 C T 134.06 PASS AF=0;AO=0;DP=1016;FAO=0;FDP=1018;FR=.;FRO=1018;\n")
matches = regex.finditer(test_str)
for match_num, match in enumerate(matches, start=1):
print(f"Match {match_num} was found at {match.start()}-{match.end()}: {match.group()}")
for group_num, group in enumerate(match.groups(), start=1):
print(f"Group {group_num} found at {match.start(group_num)}-{match.end(group_num)}: {group}")
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html