use strict;
my $str = '4A(4,5,6,7,8,9); 4B(4,5,7,8); 3A(1,2,3); 3B(1,2,3), 3C(1,2)
4A (4,5,6,7,8,9); 4B(4,5,7,8); 3A(1,2,3); 3B(1,2,3), 3C(1,2)
4A (4,5, skip 8,9); 4B(4,5,7,8); 3A(1,2,3); 3B(1,2,3), 3C(1,2)
4 A(4,5,6); 4B(4,5,7,8); 3A(1,2,3); 3B(1,2,3), 3C(1,2)';
my $regex = qr/(?:\)[;,]( )|([A-Z\d]+))|./mp;
my $subst = '$2$1';
my $result = $str =~ s/$regex/$subst/rg;
print "The result of the substitution is' $result\n";
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html