use strict;
my $str = 'friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/2a_keoni_pip501_transfe.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/2b_orit_oyc.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/3a_ecoli_kanr.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/4_ecoori_cole1pmb1pbr32.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/5_bsubori_pbs72_repa.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/6_cata9.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openBacillus/7_bsub_laci_laco_promo.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000207.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000210.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000211.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000217.gb
friendzymes-cookbook/blob/main/data/dna-annotate/input/openYeast/BBF10K_000227.gb';
my $regex = qr`(BBF10K)(.*)\.(gb|gbk)`mp;
if ( $str =~ /$regex/g ) {
print "Whole match is ${^MATCH} and its start/end positions can be obtained via \$-[0] and \$+[0]\n";
# print "Capture Group 1 is $1 and its start/end positions can be obtained via \$-[1] and \$+[1]\n";
# print "Capture Group 2 is $2 ... and so on\n";
}
# ${^POSTMATCH} and ${^PREMATCH} are also available with the use of '/p'
# Named capture groups can be called via $+{name}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html