import re
regex = re.compile(r"(?=(^\d\s{3}(chr\d)\s{2}\d+\s+\D+\d+\.\d+\s+\w+(?=(?:(?:\s+[01]/[01])*?\s+1/1){3})(?:(?:(?:\s+[01]/[01])*?\s+0/0){3})(?:\s+[01]/[01])*\s(^\d\s{3}((chr\d)\s{2}\d+\s+\D+\d+\.\d+\s+\w+(?:\s+[01]/[01])*\s)){1,2}^\d\s{3}(chr\d)\s{2}\d+\s+\D+\d+\.\d+\s+\w+(?=(?:(?:\s+[01]/[01])*?\s+1/1){3})(?:(?:(?:\s+[01]/[01])*?\s+0/0){3})(?:\s+[01]/[01])*\s))|(^\d\s{3}(chr\d)\s{2}\d+\s+\D+\d+\.\d+\s+\w+(?=(?:(?:\s+[01]/[01])*?\s+1/1){3})(?:(?:(?:\s+[01]/[01])*?\s+0/0){3})(?:\s+[01]/[01])*$)", flags=re.MULTILINE)
test_str = ("0 chr1 1152 NaN G A 1355.64 NaN 1/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"4 chr1 1331 NaN A C 4171.07 NaN 0/0 0/1 0/1 0/1 0/0 0/1 0/1 0/1 0/1 0/0 0/1 0/1\n"
"5 chr1 1349 NaN T C 11194.50 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"6 chr1 1401 NaN T G 10825.80 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0\n"
"5 chr1 1349 NaN T C 11194.50 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"6 chr1 1401 NaN T G 10825.80 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0\n"
"6 chr1 1401 NaN T G 10825.80 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0\n"
"5 chr1 1349 NaN T C 11194.50 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"6 chr1 1401 NaN T G 10825.80 NaN 0/1 0/1 0/1 0/1 1/1 0/1 0/1 0/1 0/1 1/1 0/1 0/1\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 1/1 1/1 1/1 0/1 1/1 0/1 1/1 0/1 1/1\n"
"8 chr1 4045 NaN G T 1917.92 NaN 1/1 1/1 1/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0")
matches = regex.finditer(test_str)
for match_num, match in enumerate(matches, start=1):
print(f"Match {match_num} was found at {match.start()}-{match.end()}: {match.group()}")
for group_num, group in enumerate(match.groups(), start=1):
print(f"Group {group_num} found at {match.start(group_num)}-{match.end(group_num)}: {group}")
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html