import java.util.regex.Matcher;
import java.util.regex.Pattern;
public class Example {
public static void main(String[] args) {
final String regex = "\\t([^: ]{1,5}):([^: ]*):([^: ]*):([^: ]*):([^: ]*):([^: ]*):([^: \\t]*)";
final String string = "1 13302 rs180734498 C T 564172 VQSRTrancheSNP99.60to99.80 BaseQRankSum=0.35;ClippingRankSum=0.062;DB;ExcessHet=0.0012;FS=5.483;InbreedingCoeff=0.0501;MQ=26.09;MQ0=0;MQRankSum=-3.805;QD=6.19;ReadPosRankSum=-1.494;SOR=1.191;VQSLOD=-0.9551;culprit=QD;DP=182805;AF=0.279;MLEAC=1817;MLEAF=0.279;AN=4308;AC=1464 GT:AD:DP:GQ:PGT:PID:PL ./.:0,0:0:0::.:. ./.:0,0:0:0:.:.:. ./.:0,0:0:0::.:. ./.:0,0:0:0:0,4,9:.:.";
final Pattern pattern = Pattern.compile(regex, Pattern.MULTILINE);
final Matcher matcher = pattern.matcher(string);
while (matcher.find()) {
System.out.println("Full match: " + matcher.group(0));
for (int i = 1; i <= matcher.groupCount(); i++) {
System.out.println("Group " + i + ": " + matcher.group(i));
}
}
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Java, please visit: https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html