import re
regex = re.compile(r"\t([^: ]{1,5}):([^: ]*):([^: ]*):([^: ]*):([^: ]*):([^: ]*):([^: \t]*)", flags=re.MULTILINE)
test_str = "1 13302 rs180734498 C T 564172 VQSRTrancheSNP99.60to99.80 BaseQRankSum=0.35;ClippingRankSum=0.062;DB;ExcessHet=0.0012;FS=5.483;InbreedingCoeff=0.0501;MQ=26.09;MQ0=0;MQRankSum=-3.805;QD=6.19;ReadPosRankSum=-1.494;SOR=1.191;VQSLOD=-0.9551;culprit=QD;DP=182805;AF=0.279;MLEAC=1817;MLEAF=0.279;AN=4308;AC=1464 GT:AD:DP:GQ:PGT:PID:PL ./.:0,0:0:0::.:. ./.:0,0:0:0:.:.:. ./.:0,0:0:0::.:. ./.:0,0:0:0:0,4,9:.:."
matches = regex.finditer(test_str)
for match_num, match in enumerate(matches, start=1):
print(f"Match {match_num} was found at {match.start()}-{match.end()}: {match.group()}")
for group_num, group in enumerate(match.groups(), start=1):
print(f"Group {group_num} found at {match.start(group_num)}-{match.end(group_num)}: {group}")
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Python, please visit: https://docs.python.org/3/library/re.html