$re = '/\[\s*(https?:\/\/[^\]\s]+)\s+([^\[\]]*)\[\[([^\]\|]+)(?:\|[^\]]*)?\]\]\s+(.*)\]/m';
$str = '[http://www.catalogueoflife.org/annual-checklist/2011/search/all/key/Typhlodromips+digitulus/match/1 Typhlodromips digitulus [[Catalogue of Life]] saytında]';
$subst = "[$1 $2$3 $4]";
$result = preg_replace($re, $subst, $str);
echo "The result of the substitution is ".$result;
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php