const regex = /(?:\G(?!^)|\()[^)(]*+\K(\(((?>[^)(]+|(?1))*)\))/gm;
// Alternative syntax using RegExp constructor
// const regex = new RegExp('(?:\\G(?!^)|\\()[^)(]*+\\K(\\(((?>[^)(]+|(?1))*)\\))', 'gm')
const str = `Record ID
What is the best food? (choice=Nachos)
What is the best food? (choice=Tacos (big bent nachos))
What is the best food? (choice=Chips with stuff)
Complete?
So ((this) one (has) (many) (inside)) (none here) (but (here) and (here))
Deeper nesting: (l0 (l1 (l2) l1 (l2) l1)) out (a (b) (b) a ((c) b)) out (no)`;
const subst = `$2`;
// The substituted value will be contained in the result variable
const result = str.replace(regex, subst);
console.log('Substitution result: ', result);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for JavaScript, please visit: https://developer.mozilla.org/en/docs/Web/JavaScript/Guide/Regular_Expressions