using System;
using System.Text.RegularExpressions;
public class Example
{
public static void Main()
{
string pattern = @"process\s+(\w+|\""[^\""]+\""|'[^']+')\s*{((.|\n|\r)*)}";
string input = @"nextflow.enable.dsl=2
// params.module_dir = '.'
params.dbs_dir = '/mnt/OmicNAS/dd/alphafold/dbs'
params.max_template_date = '2020-05-14'
params.db_preset = 'reduced_dbs'
params.model_preset = 'monomer'
params.outdir = './'
params.cachedir = '/mnt/OmicNAS/cache/alphafold'
process ALPHAFOLD {
conda ""${moduleDir}/environment.yml""
echo true
maxForks 1
stageInMode 'copy'
storeDir ""${params.cachedir}""
publishDir ""${params.outdir}"", mode: 'copy'
input:
path fasta
output:
path ""*"", emit: outputs
script:
""""
python3 ${moduleDir}/docker/run_docker.py \
--fasta_paths=${fasta} \
--max_template_date=${params.max_template_date} \
--model_preset=${params.model_preset} \
--db_preset=${params.db_preset} \
--data_dir=${params.dbs_dir} \
--output_dir=\$PWD
""""
}
";
RegexOptions options = RegexOptions.Multiline;
foreach (Match m in Regex.Matches(input, pattern, options))
{
Console.WriteLine("'{0}' found at index {1}.", m.Value, m.Index);
}
}
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for C#, please visit: https://msdn.microsoft.com/en-us/library/system.text.regularexpressions.regex(v=vs.110).aspx