const regex = /process\s+(\w+|\"[^\"]+\"|'[^']+')\s*{((.|\n|\r)*)}/gm;
// Alternative syntax using RegExp constructor
// const regex = new RegExp('process\\s+(\\w+|\\"[^\\"]+\\"|\'[^\']+\')\\s*{((.|\\n|\\r)*)}', 'gm')
const str = `nextflow.enable.dsl=2
// params.module_dir = '.'
params.dbs_dir = '/mnt/OmicNAS/dd/alphafold/dbs'
params.max_template_date = '2020-05-14'
params.db_preset = 'reduced_dbs'
params.model_preset = 'monomer'
params.outdir = './'
params.cachedir = '/mnt/OmicNAS/cache/alphafold'
process ALPHAFOLD {
conda "\${moduleDir}/environment.yml"
echo true
maxForks 1
stageInMode 'copy'
storeDir "\${params.cachedir}"
publishDir "\${params.outdir}", mode: 'copy'
input:
path fasta
output:
path "*", emit: outputs
script:
"""
python3 \${moduleDir}/docker/run_docker.py \\
--fasta_paths=\${fasta} \\
--max_template_date=\${params.max_template_date} \\
--model_preset=\${params.model_preset} \\
--db_preset=\${params.db_preset} \\
--data_dir=\${params.dbs_dir} \\
--output_dir=\\\$PWD
"""
}
`;
// Reset `lastIndex` if this regex is defined globally
// regex.lastIndex = 0;
let m;
while ((m = regex.exec(str)) !== null) {
// This is necessary to avoid infinite loops with zero-width matches
if (m.index === regex.lastIndex) {
regex.lastIndex++;
}
// The result can be accessed through the `m`-variable.
m.forEach((match, groupIndex) => {
console.log(`Found match, group ${groupIndex}: ${match}`);
});
}
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for JavaScript, please visit: https://developer.mozilla.org/en/docs/Web/JavaScript/Guide/Regular_Expressions