$re = '/process\s+(\w+|\"[^\"]+\"|\'[^\']+\')\s*{((.|\n|\r)*)}/m';
$str = 'nextflow.enable.dsl=2
// params.module_dir = \'.\'
params.dbs_dir = \'/mnt/OmicNAS/dd/alphafold/dbs\'
params.max_template_date = \'2020-05-14\'
params.db_preset = \'reduced_dbs\'
params.model_preset = \'monomer\'
params.outdir = \'./\'
params.cachedir = \'/mnt/OmicNAS/cache/alphafold\'
process ALPHAFOLD {
conda "${moduleDir}/environment.yml"
echo true
maxForks 1
stageInMode \'copy\'
storeDir "${params.cachedir}"
publishDir "${params.outdir}", mode: \'copy\'
input:
path fasta
output:
path "*", emit: outputs
script:
"""
python3 ${moduleDir}/docker/run_docker.py \\
--fasta_paths=${fasta} \\
--max_template_date=${params.max_template_date} \\
--model_preset=${params.model_preset} \\
--db_preset=${params.db_preset} \\
--data_dir=${params.dbs_dir} \\
--output_dir=\\$PWD
"""
}
';
preg_match_all($re, $str, $matches, PREG_SET_ORDER, 0);
// Print the entire match result
var_dump($matches);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php