$re = '/^((<PackageReference Include=".*" Version=).*)$\s+?^(?=.*^\2.*$)/m';
$str = '<PackageReference Include="CommandLineParser" Version="2.2.1" />
<PackageReference Include="CommandLineParser" Version="2.2.1" />
<PackageReference Include="CommandLineParser" Version="2.2.2" />
<PackageReference Include="Bob" Version="2.2.2" />
<PackageReference Include="Bob" Version="2.2.1" />';
preg_match_all($re, $str, $matches, PREG_SET_ORDER, 0);
// Print the entire match result
var_dump($matches);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php