use strict;
my $str = '0.4066145E-07-0.3677403
0.4066145E-07-0.345465E-07';
my $regex = qr/(?<=E-\d\d)(?=-\d+.)/mp;
my $subst = ',';
my $result = $str =~ s/$regex/$subst/rg;
print "The result of the substitution is' $result\n";
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for Perl, please visit: http://perldoc.perl.org/perlre.html