$re = '/\s*|\(([^()\r\n]+|(?>))\)/m';
$str = '(C,D) (E,F) (G,H) (J,K)
(C,D) (E,F) (G,H) (J,K)
((C,D) (E,F) (G,H) (J,K)';
$subst = "";
$result = preg_replace($re, $subst, $str);
echo "The result of the substitution is ".$result;
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php