$re = '/^(?!(?:\._|\.).*).*(?<!\(Disc [2-9]\))\..*(?<!bin)$/m';
$str = 'Castlevania Symphony of the Night (USA).chd
Chrono Cross (USA) (Disc 1).iso
Chrono Cross (USA) (Disc 2).iso
Crash Bandicoot (USA).cue
Crash Bandicoot (USA) (1).bin
Crash Bandicoot (USA) (2).bin
Final Fantasy VII (USA) (Disc 1).chd
Final Fantasy VII (USA) (Disc 2).chd
Final Fantasy VII (USA) (Disc 3).chd
Metal Gear Solid (USA) (Disc 1).cue
Metal Gear Solid (USA) (Disc 1) (1).bin
Metal Gear Solid (USA) (Disc 1) (2).bin
Metal Gear Solid (USA) (Disc 1) (3).bin
Metal Gear Solid (USA) (Disc 2).cue
Metal Gear Solid (USA) (Disc 2) (1).bin
Metal Gear Solid (USA) (Disc 2) (2).bin
Metal Gear Solid (USA) (Disc 2) (3).bin';
preg_match_all($re, $str, $matches, PREG_SET_ORDER, 0);
// Print the entire match result
var_dump($matches);
Please keep in mind that these code samples are automatically generated and are not guaranteed to work. If you find any syntax errors, feel free to submit a bug report. For a full regex reference for PHP, please visit: http://php.net/manual/en/ref.pcre.php